rs38746962 SNP Detail

Summary

• ID
  rs38746962
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:15218113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACTGTAAA GTAGCGTACA
  GGTGGGAGTG ATTCCTAGGA ATTATCTTTG ATTTACTCAC AGGCATATCG TTGGGGCGAC
  CGGGTCAACC TTAAATTTCA GTTTTGGTGG GTTAATTTAA AAAAGCAATT CATGTAGCGG
  GCATTTTGCA ATCTAAGGTC GTAGTCACCC TGTTTTTCTT ATCCTCGAAA GTTGTGATTA
  K
  TTTTAGTTCT AGGATTTTGT GTAGCCTAGG AAAACTGTAG TCTTTTCTCC TTTAGTACAT
  ATGGCCGTTT TGCCTGCCTA ATATTTCTAC ACCACGTGCA CGCAGTGCTC ACAGAGCCCA
  GAAGAGGACA TCGAATCTCT TAGGACTGCT TACAGCTATT TTTAGGCTGG CATGTGAGTT
  CTGGGAGTCT CATCTTAGTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51990148	NES15006021	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38746962					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51990148	NES15006021	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:15218113 () rs orientation: forward

Symbol	Name	Function Class
4931406C07Rik	RIKEN cDNA 4931406C07 gene	369 bp upstream
Cpgi21368	CpG island 21368	36 bp distal
Rr205988	regulatory region 205988	within coordinates
Rr401250	regulatory region 401250	536 bp downstream
Taf1d	TATA-box binding protein associated factor, RNA polymerase I, D	within coordinates
Tssr83860	transcription start site region 83860	598 bp downstream
Tssr83861	transcription start site region 83861	577 bp downstream
Tssr83862	transcription start site region 83862	549 bp downstream
Tssr88240	transcription start site region 88240	703 bp upstream
Tssr88241	transcription start site region 88241	658 bp upstream