rs38747607 SNP Detail

Summary

• ID
  rs38747607
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:32669060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGTTTGTG GAGGGGAAAC
  TGGGAAAGGG GATAATATTT GAAATGTAAG TGAATAAGAT ATCCAATAAA TAAAATTAAA
  TTAAAATTAA ATAAAATGAC AAAAAAATCA GCTGTACCTT CTAGAAGAAC AAAAGTGAGA
  TTGATGCCAT TCCAACACTC TTGATCCTGA CCATGTCCTC CCCACTTCAC ACATCATACA
  Y
  TGGCTCTTCA AACCAATCCC ATTCTCACCA TCCTCCTTCA TCACTTTTTC TTGGTTGCTT
  CATTTGTTCC CATTAGGACT ATGCTTCTCC TGTAGTACTG TCCCTGGTCA GCACCCCAGC
  CATTCATTAC CTGGCTATGC CCATGCCCCA AATGCAAGTG TTCTGGGAAC AAACCCAGCA
  TTCTTCCTAG CATAGCCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51264467	NES13790665	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38747607					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51264467	NES13790665	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:32669060 () rs orientation: forward

Symbol	Name	Function Class
Rr379152	regulatory region 379152	509 bp downstream