rs38748381 SNP Detail

Summary

• ID
  rs38748381
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:63282969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGTACAC CTGGGACACA
  GGATGCTCAA GAAGATGTGG CAAGAGAGGA CATAGGTGCC AGGATAATCA AGATGAGCCT
  GAGGACAGCA AGGAGGACTG TGGGGCCTTA TGAGGAAAGG AGACTAGCAC TGTGCATATT
  GTGAAGAGCA CCAGCTGCAG AGAAGGGATG CCATTCGGGG TCAAAGACTG GAGGCTGCTA
  R
  CTCACCTAAG GTGCCACATG CTTGGCTTAG ACCCAAGCAT GGCCTTGGTG GTACGAGCAT
  CTAGCTTTCA AAATGAAATT ATAGATACCA CCATTTCATT TTTTATCAAC CCAAGGCAGT
  AAATGACACC ACTCAGTGTT CTCTTATAGT CCCTGTAAGT CAGACGGCAC ATCTGCCTGT
  TAAAACATTC TTCCCCGTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52026094	NES15043514	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38748381					SNP	G	G	A	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52026094	NES15043514	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:63282969 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi21914	CpG island 21914			1580 bp proximal
Map2k5	mitogen-activated protein kinase kinase 5			Intron
				Noncoding-Transcript-Variant
Tssr90089	transcription start site region 90089			1937 bp downstream