rs387511181 SNP Detail

Summary

• ID
  rs387511181
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:113366787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTT CTTTCTTTCT TTCTTTCTTT
  Y
  TTTTTTTTTT TTTTTTTTTA AACAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	RF/J	RIIIS/J	SEA/GnJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss919002728	MGP_WTSI_7_113767550	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	C	T	T	T	C	T	T	C	C	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	RF/J	RIIIS/J	SEA/GnJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs387511181					SNP	T	T	C	T	T	T	C	T	T	C	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss919002728	MGP_WTSI_7_113767550	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:113366787 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19594	CpG island 19594	527 bp distal
Rr653859	regulatory region 653859	1366 bp distal
Rr653860	regulatory region 653860	139 bp proximal
Rr653861	regulatory region 653861	1102 bp proximal
Rr653862	regulatory region 653862	1725 bp proximal
Spon1	spondin 1, (f-spondin) extracellular matrix protein	within coordinates
Tssr68625	transcription start site region 68625	1755 bp downstream
Tssr68626	transcription start site region 68626	1703 bp downstream
Tssr68627	transcription start site region 68627	1639 bp downstream
Tssr68628	transcription start site region 68628	1511 bp downstream
Tssr68629	transcription start site region 68629	1487 bp downstream
Tssr68630	transcription start site region 68630	1452 bp downstream
Tssr68631	transcription start site region 68631	1351 bp downstream
Tssr68632	transcription start site region 68632	1295 bp downstream