rs38752016 SNP Detail

Summary

• ID
  rs38752016
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:92089040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGTGGTGT TACATGTAGT
  CACAAAGCAT AACAAACAGC TTGGAAAACC ATTAGTAGGG AACATGTTAG GTTAAAGAGT
  GAGATAACAA ACATGTTAAG AACATGTTGA GAACATGTTA AGTGAGAATG AGATAATCCT
  CAAGATACTT AAGTCAATTA AGCAAGGTGC AGAATATGAC TATTTGTATA AATGCTTGCA
  Y
  GTAGGTAGAA TATTCTACAA AGAATCAACA GTAGCTACCT CTTTGAGAAA GTAAAGCTTG
  AATGAGTCTT ATAATACATG AGGGTTTTAA AGTTATGTTT ATAAATATGT AATTTTCATA
  GCAGCATTGT TGGTTCAGAA GTAGAAATAA CATACCCGTC TATGAGCTGA TGGGTGGAGA
  GGCACAGTGT GGCTTGTCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss50605125	NES14041033	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs38752016					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50605125	NES14041033	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:92089040 () rs orientation: forward

Symbol	Name	Function Class
Fto	FTO alpha-ketoglutarate dependent dioxygenase	within coordinates
Rr178622	regulatory region 178622	961 bp proximal
Rr191071	regulatory region 191071	441 bp distal
Rr191072	regulatory region 191072	962 bp proximal
Tssr78731	transcription start site region 78731	849 bp upstream