rs38752889 SNP Detail

Summary

• ID
  rs38752889
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27835113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAACTAGT TCAGAGACTT
  CAAGCCCATT CTAGGCAGGT CCAGTCATGG TCTTGATTCC TTCCCAGCTG GGGCTCAAGA
  GGCACCCCCA GCAGCTGTGT ACATTAAAAC AGCCAACAGA ATGTCGGCCA GCTCAGTCAC
  AGTCTGAGTG ACGCAGAGAG GAAGAGGCAT CTGGAGCTGA TATAGATGTC CTCACCACCA
  R
  GAAGAAACAG GGTAGTGGAA AACCAGATCC CTCAGTCCAG AGGACCTTTA GGTAAGACTT
  ACCTTTAGGT AAGGTAATGT CCAGGACGTT AGGTAAGAAT CAGGGTTTCT CCACACATAA
  GCAGATCAGA TCTCAAATTC AAATAAATCA AGACCCCAAA GCCACTGCAG GACCCAAAAC
  CCCTATATGA TGAGGGATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51887456	NES14907534	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38752889					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51887456	NES14907534	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27835113 () rs orientation: forward

Symbol	Name	Function Class
Fcgbpl1	Fc fragment of IgG binding protein like 1	within coordinates
Gm21925	predicted gene, 21925	within coordinates
Gm38976	predicted gene, 38976	within coordinates
Tssr65385	transcription start site region 65385	630 bp downstream
Tssr65386	transcription start site region 65386	1416 bp upstream
Tssr65387	transcription start site region 65387	1745 bp upstream
Tssr65388	transcription start site region 65388	1842 bp upstream
Tssr65389	transcription start site region 65389	1898 bp upstream
Tssr71448	transcription start site region 71448	1410 bp downstream
Tssr71449	transcription start site region 71449	1420 bp downstream
Tssr71450	transcription start site region 71450	1437 bp downstream
Tssr71451	transcription start site region 71451	1830 bp downstream