rs38755281 SNP Detail

Summary

• ID
  rs38755281
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:64441456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAAAACCT TCATTTATTT
  TTTGATTAAT CTTTACCACA GAATAGTGAC CTTGATTTCA TGGTGCAGGT AAGTCAAACC
  GACTTTTTCT ATAAAATTTA GATGGAAGCA TGTTATAAAT ATGAAATGCT AAGTCCCTGG
  AAACTAATTT GAACTTTACA TTTTTTATAA TAAAAGATCA ACCGAAAATC AATAAATTAA
  R
  CAACTCAATA TTAAAAGCCT ATTTTTCTCT TGATCAGATA TACTTGATTA CTTTTGAGAA
  TAACTAAGGT ATCACCTCAC CAGAATCTGT AATAACTACA TTATAACGTT TTTCTTAGGA
  AGCAAAGTAC GTGTAGAAAA CTCATCCATT GGGGAAGAAA AAGTTGTAAT TGCTTTTATG
  AACATATTTT TAAAAAGCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51323155	NES13758832	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38755281					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51323155	NES13758832	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:64441456 () rs orientation: forward

Symbol	Name	Function Class
D6Rck360	DNA segment, Chr 6, Rockefeller University 360	1341 bp proximal
Grid2	glutamate receptor, ionotropic, delta 2	Intron
Rr379493	regulatory region 379493	within coordinates