rs38756086 SNP Detail

Summary

• ID
  rs38756086
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110230994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGAATTCAA GGCAAGTAGA ACTGTGGTGG TTCAGCCCGG
  AGAGGAACCA GACAGCTGCT CTGCTGGAGT CGTTCCTATT GCTAAACCTG TGACTTGAGA
  Y
  ATTTCTGAGC AGACAGAGAC CCTCTTATGA CCAGCCTGCT GGAGCACTTG GGATTAACTA
  AAGGTCACCA CAAAGCCTCG GGCCCTTCTC TGGAGGCTGT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50455943	NES14118516	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38756086					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50455943	NES14118516	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110230994 () rs orientation: forward

Symbol	Name	Function Class
Adm	adrenomedullin	1967 bp downstream
Cpgi19578	CpG island 19578	984 bp distal
Gm28863	predicted gene 28863	890 bp upstream
Gm72687	predicted gene, 72687	1565 bp upstream
Rr400547	regulatory region 400547	1279 bp downstream
Rr653271	regulatory region 653271	1576 bp distal
Rr653272	regulatory region 653272	1075 bp distal
Rr653273	regulatory region 653273	1421 bp distal
Rr653274	regulatory region 653274	within coordinates