rs387564088 SNP Detail

Summary

• ID
  rs387564088
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121980145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATGA GCTACGTTTC GTGCATGTGC
  R
  CACACACACA CACACACACA CACAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ
ss915665859	MGP_WTSI_2_122149664	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ
rs387564088					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915665859	MGP_WTSI_2_122149664	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121980145 () rs orientation: forward

Symbol	Name	Function Class
B2m	beta-2 microglobulin	within coordinates
Cpgi12169	CpG island 12169	1420 bp distal
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	within coordinates
Rr397252	regulatory region 397252	1935 bp downstream
Rr563912	regulatory region 563912	1968 bp distal
Rr563913	regulatory region 563913	461 bp distal
Tssr19805	transcription start site region 19805	1968 bp downstream
Tssr19806	transcription start site region 19806	1936 bp downstream
Tssr19807	transcription start site region 19807	480 bp downstream
Tssr19808	transcription start site region 19808	406 bp downstream
Tssr19809	transcription start site region 19809	90 bp downstream
Tssr19810	transcription start site region 19810	898 bp upstream
Tssr19811	transcription start site region 19811	1211 bp upstream
Tssr19812	transcription start site region 19812	1246 bp upstream
Tssr19813	transcription start site region 19813	1270 bp upstream
Tssr19814	transcription start site region 19814	1293 bp upstream
Tssr19815	transcription start site region 19815	1309 bp upstream
Tssr19816	transcription start site region 19816	1325 bp upstream
Tssr19817	transcription start site region 19817	1348 bp upstream
Tssr19818	transcription start site region 19818	1371 bp upstream
Tssr19819	transcription start site region 19819	1428 bp upstream
Tssr25955	transcription start site region 25955	1246 bp downstream
Tssr25956	transcription start site region 25956	1323 bp downstream
Tssr25957	transcription start site region 25957	1441 bp downstream