rs38760881 SNP Detail

Summary

• ID
  rs38760881
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:101076486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGCAACTTC TCAGATAATG CTAACTTCTG
  TAACTGAGAA CGGTGCTGAT CAAATACTTT ATCCTCAAAC CAGGGTGAAA AAGAGTATGT
  GGGGCATTTT TGTCTTTTGT CTACTTGATA TTGTTTAAAA AAACAAAACA GAATAAACTG
  R
  ACTTCAAATG TAAAAGAATT ATTTCAAGAA TAGCTTTTTA ATTATTATCA GAAGGGGAAG
  CAATTATTCC ATATTCCCCT AATCTCTTCA CTCAAAATAT GACAGAAATA GTCattttta
  tatgataatt tacaaaaata ttattagttt                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50785733	NES14211493	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A		G	A	G	G		A
ss323148490	CHEV_9_101101617	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38760881					SNP	A	A	A	A	A	A	A	A	A	A	G	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50785733	NES14211493	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:101076486 () rs orientation: forward

Symbol	Name	Function Class
Gm67595	predicted gene, 67595	within coordinates
Ppp2r3a	protein phosphatase 2, regulatory subunit B'', alpha	within coordinates
Rr685595	regulatory region 685595	73 bp distal
Rr685596	regulatory region 685596	1358 bp proximal
Tssr91107	transcription start site region 91107	333 bp upstream
Tssr91108	transcription start site region 91108	290 bp upstream
Tssr91109	transcription start site region 91109	207 bp upstream
Tssr91110	transcription start site region 91110	199 bp upstream