rs38761527 SNP Detail

Summary

• ID
  rs38761527
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:62319190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTGAAGA GTGACTTCTA
  AGCAACTTGT CAGCCTTCCT CTTGGCTTCA GCTGTTCCAG GCTCACTCTG TGACAGCCGC
  TGTCCTTCCT GGTGACTTTG GATGGGCTTG GTTTCCCCAA GACCTTTCTT TTTCTTTGGG
  AGAATAGGTT TCCTTTGCCC TCTGCAGTGT GACGACTGCT CTTGTGCATA ATCATTCAAA
  R
  GAGTGCACTT CCTAACCTAC ACACCTGAGT CTCTTGTTAA ACCAGTGATG TAAGTCTCGC
  TGTCCCCTTT TGTTCCCCAC TTGGGACAGG GTCTCGTGTA TCCCCAGATT GGTCTCCAAT
  GGACTAAGAA GCTGAGGGTG ACTTTATACT GTTGATCCTC TTGTCTGTAG CTCCCTAATG
  CTGGGATTAC AGGCATGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	NZW/LacJ	WSB/EiJ
ss50718981	NES14253099	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	NZW/LacJ	WSB/EiJ
rs38761527					SNP	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50718981	NES14253099	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:62319190 () rs orientation: forward

Symbol	Name	Function Class
Rr196313	regulatory region 196313	1411 bp proximal
Rr201157	regulatory region 201157	211 bp proximal