rs38762489 SNP Detail

Summary

• ID
  rs38762489
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70705068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCTCTCT GTATGGGATG
  TGAAAGTTAC TATTGTGGAA TTGGGATCTA TGTTCTTCCT GTATATATTG TATACTTCAT
  AATAACTTCA CCTAAAGAAA TATCTAATAC CCAGTGCATA CATAAAAGAG GATACAAGGA
  ATGAATCATA CGTCAAGGCC AGAAAGACAA TAAAGTAGGG GATCCAGGAT CAAATCTCCC
  R
  CAACCTTGAG CCTTCTACTA TTCTGCCTTC CAGAGCTCAA AGTACAAAAC ACATAATTCA
  AACACATGAT CCCTCCTTGG GGTCTCTTCC TTCATGCATC GAATTAGAAA TAGCCATGTA
  TAAAATGAGA TAGAAGAGAC CTTCATCAAC AGGTCAAAGA ATATAGGTAA TTTTGTCTGG
  GTATGAAGAG CCCACGTATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51676605	NES14820363	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38762489					SNP	A	A	A	A	A	A	G	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51676605	NES14820363	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70705068 () rs orientation: forward

Symbol	Name	Function Class
Gm30211	predicted gene, 30211	1129 bp upstream
Gm68839	predicted gene, 68839	1118 bp upstream
Igk	immunoglobulin kappa chain complex	1330 bp downstream
Igkc	immunoglobulin kappa constant	1330 bp downstream
Rr150202	regulatory region 150202	within coordinates
Rr399686	regulatory region 399686	1273 bp downstream
Tssr1880	transcription start site region 1880	1233 bp downstream
Tssr56957	transcription start site region 56957	1612 bp downstream
Tssr56958	transcription start site region 56958	1596 bp downstream
Tssr56959	transcription start site region 56959	1578 bp downstream
Tssr56960	transcription start site region 56960	1563 bp downstream
Tssr56961	transcription start site region 56961	1547 bp downstream
Tssr56962	transcription start site region 56962	1535 bp downstream
Tssr56963	transcription start site region 56963	1488 bp downstream
Tssr56964	transcription start site region 56964	1477 bp downstream
Tssr56965	transcription start site region 56965	1465 bp downstream
Tssr56966	transcription start site region 56966	1457 bp downstream
Tssr56967	transcription start site region 56967	1437 bp downstream
Tssr56968	transcription start site region 56968	1407 bp downstream
Tssr56969	transcription start site region 56969	1383 bp downstream
Tssr56970	transcription start site region 56970	1364 bp downstream
Tssr56971	transcription start site region 56971	1352 bp downstream
Tssr56972	transcription start site region 56972	1293 bp downstream
Tssr56973	transcription start site region 56973	1282 bp downstream
Tssr56974	transcription start site region 56974	1252 bp downstream
Tssr56975	transcription start site region 56975	1215 bp downstream
Tssr61321	transcription start site region 61321	1575 bp upstream
Tssr61322	transcription start site region 61322	1427 bp upstream
Tssr61323	transcription start site region 61323	1346 bp upstream
Tssr61324	transcription start site region 61324	1269 bp upstream
Tssr61325	transcription start site region 61325	1236 bp upstream
Tssr61326	transcription start site region 61326	1223 bp upstream
Tssr61327	transcription start site region 61327	1197 bp upstream
Tssr61328	transcription start site region 61328	1119 bp upstream