rs387627131 SNP Detail

Summary

• ID
  rs387627131
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:6646100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCT TCCTTCCTTC CTTCCTTCCT
  Y
  CCTTCCTTCC TTCCCTCCTT TTCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	CBA/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	SEA/GnJ	ST/bJ	SWR/J
ss917817230	MGP_WTSI_6_6646100	EVA_MGPV3	EVA_MGPV3	f	SNP	T	C	C	C	C	T	C	T	C	C	C	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	CBA/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	SEA/GnJ	ST/bJ	SWR/J
rs387627131					SNP	T	C	C	C	C	T	C	T	C	C	C	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917817230	MGP_WTSI_6_6646100	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:6646100 () rs orientation: forward

Symbol	Name	Function Class
Gm18006	predicted gene, 18006	within coordinates
Gm20618	predicted gene 20618	within coordinates