rs38762773 SNP Detail

Summary

• ID
  rs38762773
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165156355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAATAACCTG GTGCTGAGAA AAGACTTTAT TTTTGTAAGT
  AGGTTGGAGA AATGTACAGA TGTAATTGGA TTGAGGGGCA CAGACAGACA ACGTAGGAGG
  Y
  GGAAGAGGTC ATGTCTATGG AGCAGTTCAG GAAAACACGG TGAGGTACAC ACAGTTCAGG
  AAAACACGGT AAGGTACACA CAGTTCAGGA AAACACGGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51401420	NES14455666	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38762773					SNP	T	T	T	T	T	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51401420	NES14455666	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165156355 () rs orientation: forward

Symbol	Name	Function Class
Dcaf6	DDB1 and CUL4 associated factor 6	714 bp downstream
Rr20301	regulatory region 20301	within coordinates
Rr25485	regulatory region 25485	1031 bp distal
Rr25486	regulatory region 25486	776 bp proximal
Rr25487	regulatory region 25487	1803 bp proximal
Tssr14767	transcription start site region 14767	1026 bp downstream