rs387629053 SNP Detail

Summary

• ID
  rs387629053
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:87957304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTAT ACCCACTGTG ACATTCAATC
  M
  GTTTTACAAA ACTACTCTCT TAATT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	FVB/NJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss921468920	MGP_WTSI_12_87990534	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	A	A	A	C	C	A	A	A	A	A	A	A	C	C	C	C	A	C	C	A	C	A	A	A	A	A	C	C	A	C	C	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	FVB/NJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs387629053					SNP	C	C	C	C	A	A	A	C	C	A	A	A	A	A	A	A	C	C	C	C	A	C	C	A	C	A	A	A	A	A	C	C	A	C	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921468920	MGP_WTSI_12_87990534	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:87957304 () rs orientation: forward

Symbol	Name	Function Class
Gm2099	predicted gene 2099	1929 bp downstream
Gm46992	predicted gene 46992	1078 bp downstream
Gm58982	predicted gene, 58982	1575 bp downstream
Rr387592	regulatory region 387592	1921 bp upstream