rs387654803 SNP Detail

Summary

• ID
  rs387654803
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:39304284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCT TCCTTCCTTC CTTCCTCCCT
  Y
  CCTCCCTCCC TCCCTCCCTC CCTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	CZECHII/EiJ	NZO/HlLtJ	RIIIS/J
ss924274012	MGP_WTSI_19_39315840	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10SnJ	C57BR/cdJ	CZECHII/EiJ	NZO/HlLtJ	RIIIS/J
rs387654803					SNP	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924274012	MGP_WTSI_19_39315840	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:39304284 () rs orientation: forward

Symbol	Name	Function Class
Cyp2c29	cytochrome P450, family 2, subfamily c, polypeptide 29	within coordinates
Tssr156337	transcription start site region 156337	352 bp downstream
Tssr156338	transcription start site region 156338	319 bp downstream
Tssr156339	transcription start site region 156339	293 bp downstream
Tssr156340	transcription start site region 156340	169 bp downstream
Tssr156341	transcription start site region 156341	143 bp downstream