rs38765527 SNP Detail

Summary

• ID
  rs38765527
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65545486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGA AAATACCAGA TGATGTTTTT
  Y
  GAAAACTTAC AGTCCAAATA GAAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss50965378	NES13945793	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C	C	T	C	T	C
ss135252862	ENSMUSSNP1908741	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs38765527					SNP	C	C	T	T	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50965378	NES13945793	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65545486 () rs orientation: forward

Symbol	Name	Function Class
Gm65444	predicted gene, 65444	538 bp downstream
Rr577715	regulatory region 577715	1834 bp distal
Rr577716	regulatory region 577716	364 bp distal
Rr577717	regulatory region 577717	853 bp proximal
Rr577718	regulatory region 577718	1251 bp proximal
Tssr33467	transcription start site region 33467	1213 bp downstream