rs38767428 SNP Detail

Summary

• ID
  rs38767428
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:57173616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGGGGTC TCAACTGAGT
  GAGGTAAACA GTTTTCCAGA GGCGTGCTGG CAAACAGAGT CTTCCTCCTC CAGAAAGCAG
  GGGGGCAATC TCTTGTCAGT CTCAGTGTCT CCTGTGACTC CCCCAATCTC GATCTGCCTG
  TCCCCTCCAT TATTCCTCTC TGGCTGCCTG ATGCAGCAGA CCCAGAAAGC CAACCGAAAT
  Y
  CATTGCAATC CTATATGCCT TCTTGTCAGT CTTTGTTAAC CCGCTCCAGA ATGCCTTCCC
  TGATCTCCAG GCTGGTTTAG ATTATCTTTC TTTTGGGGGG GCCTGGGTCC CTGTCCTCAA
  ATGGCTTGGT TTCCAGCTCC CCCATTGAAA CAGGGAAGGG ACCTCCTCCA GGACATGTAT
  GAGTCTGTCT GAGCGCTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52020748	NES15041786	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38767428					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52020748	NES15041786	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57173616 () rs orientation: forward

Symbol	Name	Function Class
Gm68485	predicted gene, 68485	within coordinates
Gm68491	predicted gene, 68491	670 bp downstream
Rr679625	regulatory region 679625	878 bp distal
Rr679626	regulatory region 679626	952 bp proximal
Tssr89773	transcription start site region 89773	543 bp upstream
Tssr89774	transcription start site region 89774	515 bp upstream