rs387678645 SNP Detail

Summary

• ID
  rs387678645
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:93295969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCGA GGCCGAGGCC GAGGCCGAGG
  C
  CGAGGCCGAG GCGGAGGCCG AGGCG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	LG/J	MA/MyJ	MOLF/EiJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
ss922966803	MGP_WTSI_15_93398088	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	LG/J	MA/MyJ	MOLF/EiJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
rs387678645					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss922966803	MGP_WTSI_15_93398088	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:93295969 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7581	CpG island 7581	within coordinates
Pphln1	periphilin 1	262 bp upstream
Rr312331	regulatory region 312331	within coordinates
Tssr132763	transcription start site region 132763	95 bp downstream
Tssr132764	transcription start site region 132764	76 bp downstream
Tssr132765	transcription start site region 132765	256 bp upstream
Tssr132766	transcription start site region 132766	339 bp upstream
Tssr135972	transcription start site region 135972	104 bp downstream
Tssr135973	transcription start site region 135973	175 bp downstream
Tssr135974	transcription start site region 135974	257 bp downstream
Tssr135975	transcription start site region 135975	531 bp downstream
Zcrb1	zinc finger CCHC-type and RNA binding motif 1	within coordinates