rs38768189 SNP Detail

Summary

• ID
  rs38768189
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:33190858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGGCTATT TTCCAGGCAG
  GTTGTATTAA GAAATCTACA ATGCCTGTGA TGTGAATAGC AGAAAGAAGA GGTGCAGTTG
  TACAGTGCAT TGCGGCAGCA CTGGCCAGGC GTTTGATATC TAGGGGGTGG GGGAAAACAA
  TGGGAAGGAG CTTCCCTGAT GGACTCAATT TCATAATCCA TGAACTGGCA ATATGAGCTG
  Y
  CTGTAGTATT CTGCCTAAGC ACCAAGCAGC CCTCGATTTG GAGTAGGAAA GCAACAGCCT
  ACAAGTAACC AGGCAGCAAG AAGATGCTGT ACTTACATGG CTATGTCCCC TTTCATTCCT
  CAGGCACCTT CCAATCCATA GCAGTATTTG CATCTTCAAA TGCTGTCAGT GAGCAAGGTT
  TAGGTCTCCT AGTTGTGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50968095	NES14414686	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38768189					SNP	T	T	T	T	T	C	T	T	T	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50968095	NES14414686	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:33190858 () rs orientation: forward

Symbol	Name	Function Class
F730043M19Rik	RIKEN cDNA F730043M19 gene	within coordinates
Gm16267	predicted gene 16267	1220 bp downstream
Rr256081	regulatory region 256081	258 bp distal
Rr256082	regulatory region 256082	743 bp proximal
Rr260246	regulatory region 260246	1258 bp distal
Rr263299	regulatory region 263299	939 bp proximal