rs38768410 SNP Detail

Summary

• ID
  rs38768410
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5847320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAATCCC CACACTGAAA
  ATGGCATGTC TGCTTCACTT ATCGATTTAA AGTAAATGGG CTATTTTTCC TTACTGGGTC
  TGGATTCTCT GGCCCCTTGA ATAGATAGAT GTCTGCTGTT GTCAATGTTC CTGCATGTAA
  GAATTAAGAC CAAGGGAGGG GAGAGAGAAC ACCTACACAA AGATAATGCA CTAAAGACCA
  Y
  GGAACTGTTC AAAACATTTC CACTTGCCAG TTAAAATTTC TTCAAGAATG TTGCTTGTCT
  GATTTATTTC TTGTCAGATT TTAAGTTGAA TCTGGAAGAG ACTAAAGGCT TCAGTGCTCC
  CAACCCCCCT CACCAGAAAT GAACAAAAAC ATTTACCTAA GGCAGCACAG CAAAGGGACT
  CGGCTCCAAT CACAAACACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50577500	NES13649159	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38768410					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50577500	NES13649159	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5847320 () rs orientation: forward

Symbol	Name	Function Class
Gm55521	predicted gene, 55521	1708 bp downstream
Malat1	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	within coordinates
Mascrna	Malat1-associated small cytoplasmic RNA	1311 bp upstream
Rr543161	regulatory region 543161	162 bp proximal
Rr543162	regulatory region 543162	1268 bp proximal
Tssr5415	transcription start site region 5415	426 bp upstream
Tssr5416	transcription start site region 5416	18 bp downstream
Tssr5417	transcription start site region 5417	1734 bp downstream
Tssr157645	transcription start site region 157645	911 bp upstream
Tssr157646	transcription start site region 157646	809 bp upstream
Tssr157647	transcription start site region 157647	722 bp upstream
Tssr157648	transcription start site region 157648	555 bp upstream
Tssr157649	transcription start site region 157649	463 bp upstream
Tssr157650	transcription start site region 157650	398 bp upstream
Tssr157651	transcription start site region 157651	328 bp upstream
Tssr157652	transcription start site region 157652	188 bp upstream
Tssr157653	transcription start site region 157653	104 bp upstream
Tssr157654	transcription start site region 157654	50 bp upstream
Tssr157655	transcription start site region 157655	24 bp upstream
Tssr157656	transcription start site region 157656	within coordinates
Tssr157657	transcription start site region 157657	118 bp downstream
Tssr157658	transcription start site region 157658	170 bp downstream
Tssr157659	transcription start site region 157659	273 bp downstream
Tssr157660	transcription start site region 157660	426 bp downstream
Tssr157661	transcription start site region 157661	447 bp downstream
Tssr157662	transcription start site region 157662	552 bp downstream
Tssr157663	transcription start site region 157663	611 bp downstream
Tssr157664	transcription start site region 157664	733 bp downstream
Tssr157665	transcription start site region 157665	740 bp downstream
Tssr157666	transcription start site region 157666	765 bp downstream
Tssr157667	transcription start site region 157667	1018 bp downstream
Tssr157668	transcription start site region 157668	1065 bp downstream
Tssr157669	transcription start site region 157669	1080 bp downstream
Tssr157670	transcription start site region 157670	1100 bp downstream
Tssr157671	transcription start site region 157671	1117 bp downstream
Tssr157672	transcription start site region 157672	1166 bp downstream
Tssr157673	transcription start site region 157673	1183 bp downstream
Tssr157674	transcription start site region 157674	1213 bp downstream
Tssr157675	transcription start site region 157675	1232 bp downstream
Tssr157676	transcription start site region 157676	1243 bp downstream
Tssr157677	transcription start site region 157677	1265 bp downstream
Tssr157678	transcription start site region 157678	1277 bp downstream
Tssr157679	transcription start site region 157679	1314 bp downstream
Tssr157680	transcription start site region 157680	1369 bp downstream
Tssr157681	transcription start site region 157681	1398 bp downstream
Tssr157682	transcription start site region 157682	1416 bp downstream
Tssr157683	transcription start site region 157683	1442 bp downstream
Tssr157684	transcription start site region 157684	1458 bp downstream
Tssr157685	transcription start site region 157685	1468 bp downstream
Tssr157686	transcription start site region 157686	1483 bp downstream
Tssr157687	transcription start site region 157687	1552 bp downstream
Tssr157688	transcription start site region 157688	1602 bp downstream
Tssr157689	transcription start site region 157689	1633 bp downstream
Tssr157690	transcription start site region 157690	1711 bp downstream
Tssr157691	transcription start site region 157691	1757 bp downstream
Tssr157692	transcription start site region 157692	1811 bp downstream
Tssr157693	transcription start site region 157693	1868 bp downstream
Tssr157694	transcription start site region 157694	1926 bp downstream
Tssr157695	transcription start site region 157695	1990 bp downstream