rs38769906 SNP Detail

Summary

• ID
  rs38769906
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:8502215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACAAGACT CCTCTAACTG
  ATTATAGATG CCACAGCTCC ACCAGCCAAG CCACCTCTTT CCTAGCCTCT TCCTATCAGC
  TCCAGCTTCT GCTCCTTTGG GAAAACCTGT TAGCCACACC TCATCTGTAT AATCCCCCAA
  CCCACATCCA GGTTCACACC CGCTCCCTCA GGGACCAGTG CCCTAACCGC AGTGCCAAGA
  R
  AGCGTGGTCC TTTCCTCACC GTGGGTCTCT GCAGTCTGGG ATCCTTAGCC CCGAGGGCTG
  CAGATGTCCT CTGGCCACCC ACTAGCAGCT TTCCTCAGCC TGCTTTGTCC CCAGGCTTGC
  TTGAGCTTCC TTTGGCCACC TCCCTAGGCT TCTGTCCTCT CCAGCAGCCC CTCGGCCTTT
  TCCCCTGGAT GCCCCGGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51776427	NES14543161	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38769906					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51776427	NES14543161	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:8502215 () rs orientation: forward

Symbol	Name	Function Class
Gm59855	predicted gene, 59855	1600 bp upstream
Litafd	LITAF domain containing	440 bp downstream
Rr319307	regulatory region 319307	1586 bp proximal
Rr322150	regulatory region 322150	1015 bp distal
Tssr137004	transcription start site region 137004	1472 bp downstream
Tssr139871	transcription start site region 139871	1600 bp upstream