TCCCT CCCTCCCTCC CTCCCTCCCT Y CCTTCCTTCC TTCCTTCCTT CCTTC Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BTBR T<+> Itpr3 |
C57BL/6J |
C57BL/6NJ |
C57BL/10SnJ |
C57BR/cdJ |
C58/J |
CE/J |
DBA/1J |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
NOD/ShiLtJ |
NZW/LacJ |
PWK/PhJ |
QSi3/Ianm |
RF/J |
RIIIS/J |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss920000406 | MGP_WTSI_9_103411615 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | T | T | C | T | T | T | T | T | T | T | T | T | C | T | T | C | T | T | C | T | C | T | T | T | T | T |
SNP Consensus Information | |||||||||||||||||||||||||||||||
SNP | Consensus Type | AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BTBR T<+> Itpr3 |
C57BL/6J |
C57BL/6NJ |
C57BL/10SnJ |
C57BR/cdJ |
C58/J |
CE/J |
DBA/1J |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
NOD/ShiLtJ |
NZW/LacJ |
PWK/PhJ |
QSi3/Ianm |
RF/J |
RIIIS/J |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
ZALENDE/EiJ |
||||
rs387757538 | SNP | T | T | C | T | T | T | T | T | T | T | T | T | C | T | T | C | T | T | C | T | C | T | T | T | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss920000406 | MGP_WTSI_9_103411615 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | C/T |
Location: Chr9:103288814 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
D9Mit242 | DNA segment, Chr 9, Massachusetts Institute of Technology 242 | 1752 bp proximal | ||||||
Gm47328 | predicted gene, 47328 | 742 bp downstream | ||||||
Gm69201 | predicted gene, 69201 | within coordinates | ||||||
Rr198513 | regulatory region 198513 | 587 bp proximal | ||||||
Rr198514 | regulatory region 198514 | 987 bp proximal | ||||||
Rr207103 | regulatory region 207103 | 1388 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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