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rs387757538 SNP Detail
Summary
  • ID
    rs387757538
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr9:103288814 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TCCCT CCCTCCCTCC CTCCCTCCCT
    Y
    CCTTCCTTCC TTCCTTCCTT CCTTC                                      
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BTBR T<+> Itpr3/J
C57BL/6J
C57BL/6NJ
C57BL/10SnJ
C57BR/cdJ
C58/J
CE/J
DBA/1J
DBA/2J
FVB/NJ
KK/HlJ
LG/J
NOD/ShiLtJ
NZW/LacJ
PWK/PhJ
QSi3/Ianm
RF/J
RIIIS/J
SJL/J
SM/J
SPRET/EiJ
ST/bJ
ZALENDE/EiJ
ss920000406 MGP_WTSI_9_103411615 EVA_MGPV3 EVA_MGPV3 f SNP T T C T T T T T T T T T C T T C T T C T C T T T T T
SNP Consensus Information
SNP Consensus Type
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BTBR T<+> Itpr3/J
C57BL/6J
C57BL/6NJ
C57BL/10SnJ
C57BR/cdJ
C58/J
CE/J
DBA/1J
DBA/2J
FVB/NJ
KK/HlJ
LG/J
NOD/ShiLtJ
NZW/LacJ
PWK/PhJ
QSi3/Ianm
RF/J
RIIIS/J
SJL/J
SM/J
SPRET/EiJ
ST/bJ
ZALENDE/EiJ
rs387757538 SNP T T C T T T T T T T T T C T T C T T C T C T T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss920000406 MGP_WTSI_9_103411615 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr9:103288814 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
D9Mit242 DNA segment, Chr 9, Massachusetts Institute of Technology 242 1752 bp proximal
Gm47328 predicted gene, 47328 742 bp downstream
Gm69201 predicted gene, 69201 within coordinates
Rr198513 regulatory region 198513 587 bp proximal
Rr198514 regulatory region 198514 987 bp proximal
Rr207103 regulatory region 207103 1388 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory