rs387757538 SNP Detail

Summary

• ID
  rs387757538
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:103288814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCT CCCTCCCTCC CTCCCTCCCT
  Y
  CCTTCCTTCC TTCCTTCCTT CCTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
ss920000406	MGP_WTSI_9_103411615	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	C	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	C	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
rs387757538					SNP	T	T	C	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	C	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss920000406	MGP_WTSI_9_103411615	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:103288814 () rs orientation: forward

Symbol	Name	Function Class
D9Mit242	DNA segment, Chr 9, Massachusetts Institute of Technology 242	1752 bp proximal
Gm47328	predicted gene, 47328	742 bp downstream
Gm69201	predicted gene, 69201	within coordinates
Rr198513	regulatory region 198513	587 bp proximal
Rr198514	regulatory region 198514	987 bp proximal
Rr207103	regulatory region 207103	1388 bp proximal