rs38776122 SNP Detail

Summary

• ID
  rs38776122
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:51728598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCCTCTC CCTAGAGCCC
  CAAACAGAAC CCTAAATCCT TCCCATCACA ACTGTCATTC GGTTGTAACC CCTCCTCTCC
  TGAGCCTCTA AAAGCCAGAC CACGCCAAGC TGTCCCATAC CCCCATTCCG GCCCCGTTTC
  TCAGCACTCA GGTCTCTCGT CGGAAAACAG GGAAGGCTGC GGTGTCTTTC GAGCAAAAGT
  R
  AAGATGAAGG AGAAGGGCGC CGAGGGGAGA GCGCGGTCAG CCCGCGCCTG GGGAAGGCGG
  CAGGAAGCGC GCCCGGCAGG GATCAGCCTC ACACGTGGGC CTGTGGCCGC AACCCGCACT
  CACCAGGCCG TCGATCTGCA CCTGCTTCAC GGCCGAATCT CCGGAGCCGC CTTTGCCTTT
  GCCCTTCCCC ACCGCGCCGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51665656	NES14579640	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38776122					SNP	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51665656	NES14579640	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:51728598 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7083	CpG island 7083	within coordinates
Eif3h	eukaryotic translation initiation factor 3, subunit H	within coordinates
Rr311732	regulatory region 311732	within coordinates
Rr404375	regulatory region 404375	243 bp upstream
Tssr134286	transcription start site region 134286	246 bp downstream
Tssr134287	transcription start site region 134287	296 bp downstream