rs38776679 SNP Detail

Summary

• ID
  rs38776679
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:149152357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACGAGATG GACACATGTG
  ATACTTTAAA AGAAACTGTC AAGGAAATGA TAAGGAATTT CCATGAGACT GTAGAAGATT
  AGGGATTTTG AAAGTGGGCA GACTCAGTGG AAGTAACATT GTTTAGGAGA CCATTGCTCA
  TAAGTACTGG GTGAAGACAA CAGTTATTTT CTGACATTCT GTAGTCTGAT TGTTATGTGA
  M
  GGAATGGCTC CTTCCACTGA GTTCCTTTTT CTTCTTTCTT TCTAAATATC ATTTGACTAC
  AACTTGTAGA TAACTCTGAC TGTAACATTA TTGGGGTCTT AATACCTTCT TCAGGCTGCA
  AGCTCTTTGA GTCAAGAACT GTGTAGGTCA TAAGCCCTTT AGGACACTTC TCCAGGTAGT
  CTGAAAGTTC TGTTTATCTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51052104	NES13892931	PERLEGEN	MM_PANEL2	f	SNP	C	A	A	A	C	A	A	A	A	A		A	A	A		A
ss321019015	CHEV_3_149109684	CHEVERUD	SCREENING_POP	f	SNP											A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38776679					SNP	C	A	A	A	C	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51052104	NES13892931	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:149152357 () rs orientation: forward

Symbol	Name	Function Class
A630039O03Rik	RIKEN cDNA A630039O03 gene	within coordinates
Gm30382	predicted gene, 30382	1219 bp upstream
Rr398127	regulatory region 398127	896 bp downstream
Rr587324	regulatory region 587324	1619 bp distal
Rr587325	regulatory region 587325	1085 bp distal
Tssr36100	transcription start site region 36100	1476 bp upstream
Tssr36101	transcription start site region 36101	1455 bp upstream
Tssr36102	transcription start site region 36102	1442 bp upstream
Tssr36103	transcription start site region 36103	1351 bp upstream
Tssr36104	transcription start site region 36104	1303 bp upstream
Tssr36105	transcription start site region 36105	1225 bp upstream