rs387770626 SNP Detail

Summary

• ID
  rs387770626
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:70730062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCACA CACACAAGCA CACACACACA
  Y
  GCATGCACAC ACTCATGCGC ACACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PWK/PhJ	RF/J	SM/J	SPRET/EiJ	ST/bJ
ss919382068	MGP_WTSI_8_70277412	EVA_MGPV3	EVA_MGPV3	f	SNP	C	T	C	C	T	C	T	T	T	T	T	T	T	C	T	C	C	T	C	C	C	T	T	T	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	AKR/J	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PWK/PhJ	RF/J	SM/J	SPRET/EiJ	ST/bJ
rs387770626					SNP	C	T	C	C	T	C	T	T	T	T	T	T	T	C	T	C	C	T	C	C	C	T	T	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss919382068	MGP_WTSI_8_70277412	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70730062 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20447	CpG island 20447	924 bp proximal
Gm38427	predicted gene, 38427	within coordinates
Rr177422	regulatory region 177422	662 bp distal
Rr186738	regulatory region 186738	738 bp proximal
Tssr2595	transcription start site region 2595	661 bp upstream
Tssr77724	transcription start site region 77724	689 bp upstream