rs38777121 SNP Detail

Summary

• ID
  rs38777121
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:143947089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGACAGGA GCTTCCCACA
  GCAGTGTCCT TGCTGAATGC TAACCTTCCG CACTTTCCTC ATGAAGAATG GGGAAACCTT
  TTCAATAAAA ACACAGGAAG GGAAGGGTCA TTGTTAAAAC CACCAATGAG ATGGTCCATG
  TGCCACACAG GTGTCTCTTC CAGAGGTGAC ACACAGTCTT CAGGCCACCT CAGTGGCTCA
  K
  CCCATCTCAT CTGGAAACAC AAGCCCAGTC CTGGCCTTGA ACACTCCCTG GGGGCTGGAC
  TGGAATCAGG CTATTCTTTG GGCATTGCTG TAATTATGTC GGTCAAGGCC TGTGTTCTTG
  ACAAAGAAGA CATCCCTCTT ACTCAACCTG AGTAATCCTT AATGAGTCCT TGTATCTTGT
  GATAAATTTC ATAATTATTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51654947	NES14643023	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38777121					SNP	G	G	G	G	G	G	T	G	G	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51654947	NES14643023	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143947089 () rs orientation: forward

Symbol	Name	Function Class
Rr398097	regulatory region 398097	778 bp upstream
Rr586608	regulatory region 586608	626 bp proximal
Rr586609	regulatory region 586609	633 bp proximal
Rr586610	regulatory region 586610	894 bp proximal