rs38778342 SNP Detail

Summary

• ID
  rs38778342
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:122069677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTACTCAGT TATCAGCAAG
  ACCACTTTCT CAGAGAAATA TGCCAAATGT TTCTGATAGT GAAACTTACA ACAGTGACTT
  TGATGATTCC AGCCCCAGAA ATTCAGGGAA AAAACTGACA GCCCAAAACC ACCAAAATTT
  GCATATCCAA GAGGAAAAAC GAGCCAATGT TGTGTCTCTT ACAGAAGTTA GAAAGGAGAA
  Y
  TGTAAGAGTC TGGATGAAGA GGACCTCAAA ATCACAGAGG AAAAAGTAAT TAATGAGAAA
  GATTCCCAGC GGAGTCTTTC TGAAGCTCAA GACACCAGCC TTCAGCAGTC AGTGTCTCAG
  AATCATTCAA GCACCCCAAA TAAAAAACCC ACATTCCAGC TTTCAAGTCC AGATCGGAAG
  GCTCTAATGA AATCATTAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss51020922	NES13905121	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs38778342					SNP	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51020922	NES13905121	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122069677 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13766	CpG island 13766			1160 bp distal
Dnttip2	deoxynucleotidyltransferase, terminal, interacting protein 2			Coding-Synonymous
				Noncoding-Transcript-Variant
Gm17494	predicted gene, 17494			within coordinates
Rr584273	regulatory region 584273			1630 bp distal
Rr584274	regulatory region 584274			1007 bp distal
Tssr31491	transcription start site region 31491			1613 bp downstream
Tssr31492	transcription start site region 31492			448 bp downstream