rs387784956 SNP Detail

Summary

• ID
  rs387784956
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:70760699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGT CCCCCATACC CACCCACCCC
  S
  ACTCCCCTAC CCACCCACTC CCCCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ
ss915481106	MGP_WTSI_2_70930355	EVA_MGPV3	EVA_MGPV3	f	SNP	G	C	C	G	G	G	G	G	G	G	G	G	G	G	G	G	C	C	C	G	C	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ
rs387784956					SNP	G	C	C	G	G	G	G	G	G	G	G	G	G	G	G	G	C	C	C	G	C	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915481106	MGP_WTSI_2_70930355	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70760699 () rs orientation: forward

Symbol	Name	Function Class
Gm39843	predicted gene, 39843	within coordinates
Rr64262	regulatory region 64262	120 bp distal
Rr367203	regulatory region 367203	376 bp upstream
Rr367204	regulatory region 367204	588 bp upstream
Tssr18236	transcription start site region 18236	777 bp upstream