rs387805296 SNP Detail

Summary

• ID
  rs387805296
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45203582 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAG CATGGCACTG CATTGCTCTA
  Y
  AAAAAAAAAA AAAATCAAGT CCTAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss923156543	MGP_WTSI_16_45383219	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs387805296					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923156543	MGP_WTSI_16_45383219	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45203582 () rs orientation: forward

Symbol	Name	Function Class
Cd200	CD200 molecule	within coordinates
Tssr4884	transcription start site region 4884	526 bp upstream
Tssr4885	transcription start site region 4885	481 bp upstream
Tssr4886	transcription start site region 4886	151 bp upstream
Tssr141220	transcription start site region 141220	610 bp upstream
Tssr141221	transcription start site region 141221	586 bp upstream
Tssr141222	transcription start site region 141222	466 bp upstream
Tssr141223	transcription start site region 141223	452 bp upstream
Tssr141224	transcription start site region 141224	429 bp upstream
Tssr141225	transcription start site region 141225	373 bp upstream
Tssr141226	transcription start site region 141226	337 bp upstream
Tssr141227	transcription start site region 141227	302 bp upstream
Tssr141228	transcription start site region 141228	261 bp upstream
Tssr141229	transcription start site region 141229	245 bp upstream
Tssr141230	transcription start site region 141230	93 bp upstream
Tssr141231	transcription start site region 141231	within coordinates
Tssr141232	transcription start site region 141232	43 bp downstream