rs387824220 SNP Detail

Summary

• ID
  rs387824220
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:36068184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTA TTCTCTCTCT CTGTCTCTCT
  S
  TCTCTCTCTC TGTCTCTCTC TCTCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	DBA/1J	DBA/2J	FVB/NJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SPRET/EiJ	ST/bJ	WSB/EiJ
ss921783955	MGP_WTSI_13_35884201	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	C	G	G	G	G	G	C	G	C	C	C	G	G	C	C	G	C	C	G	C	G	G	G	G	G	G	G	G	G	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	DBA/1J	DBA/2J	FVB/NJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SPRET/EiJ	ST/bJ	WSB/EiJ
rs387824220					SNP	G	G	G	G	G	C	G	G	G	G	G	C	G	C	C	C	G	G	C	C	G	C	C	G	C	G	G	G	G	G	G	G	G	G	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921783955	MGP_WTSI_13_35884201	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:36068184 () rs orientation: forward

Symbol	Name	Function Class
Rr271493	regulatory region 271493	584 bp distal
Rr271494	regulatory region 271494	617 bp proximal
Rr283230	regulatory region 283230	218 bp proximal