rs387827680 SNP Detail

Summary

• ID
  rs387827680
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86285688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGG AAGGAAGGAA GGAAGGAAGG
  R
  AGGGAGGGAG GGAGGGAGGG AGGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/10SnJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	MOLF/EiJ	NOD/ShiLtJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
ss914776676	MGP_WTSI_1_86357966	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/10SnJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	MOLF/EiJ	NOD/ShiLtJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
rs387827680					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss914776676	MGP_WTSI_1_86357966	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86285688 () rs orientation: forward

Symbol	Name	Function Class
C130036L24Rik	RIKEN cDNA C130036L24 gene	1618 bp upstream
Cpgi503	CpG island 503	586 bp proximal
D1Mit516	DNA Segment, Chr 1, Massachusetts Institute of Technology-516	within coordinates
Gm71192	predicted gene, 71192	1686 bp downstream
Ncl	nucleolin	within coordinates
Rr29752	regulatory region 29752	within coordinates
Rr396146	regulatory region 396146	1349 bp upstream
Snord82	small nucleolar RNA, C/D box 82	1639 bp upstream
Tssr142	transcription start site region 142	935 bp downstream
Tssr7744	transcription start site region 7744	1539 bp downstream
Tssr7745	transcription start site region 7745	1333 bp downstream
Tssr7746	transcription start site region 7746	905 bp downstream
Tssr7747	transcription start site region 7747	853 bp downstream
Tssr7748	transcription start site region 7748	672 bp downstream
Tssr7749	transcription start site region 7749	1587 bp upstream
Tssr7750	transcription start site region 7750	1672 bp upstream
Tssr12773	transcription start site region 12773	1768 bp upstream
Tssr12774	transcription start site region 12774	1638 bp upstream
Tssr12775	transcription start site region 12775	1502 bp upstream
Tssr12776	transcription start site region 12776	1315 bp upstream
Tssr12777	transcription start site region 12777	894 bp upstream
Tssr12778	transcription start site region 12778	817 bp upstream
Tssr12779	transcription start site region 12779	798 bp upstream
Tssr12780	transcription start site region 12780	745 bp upstream
Tssr12781	transcription start site region 12781	697 bp upstream
Tssr12782	transcription start site region 12782	622 bp upstream
Tssr12783	transcription start site region 12783	588 bp upstream
Tssr12784	transcription start site region 12784	561 bp upstream
Tssr12785	transcription start site region 12785	532 bp upstream
Tssr12786	transcription start site region 12786	245 bp downstream
Tssr12787	transcription start site region 12787	510 bp downstream
Tssr12788	transcription start site region 12788	1004 bp downstream
Tssr12789	transcription start site region 12789	1052 bp downstream
Tssr12790	transcription start site region 12790	1392 bp downstream
Tssr12791	transcription start site region 12791	1515 bp downstream
Tssr12792	transcription start site region 12792	1985 bp downstream