rs38782889 SNP Detail

Summary

• ID
  rs38782889
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68314189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCCCCTAA GCCAGGTGTG
  GTATGCACAG CTGTGATCCC ACCACATGGA AAGCACGTGT GAACAGCCTG AACTGTGCAG
  TGAGATCCTG TCACAATACA TTAATTAACT CATCAACAGT CTACTTTAGT TGTATATATG
  TTGTCATGAG TTAATATGTG CAGCATCAAA TTTCTGTCAG ATCTACATGA TATATTTGTA
  W
  TGTGCAAATA GAATACATTG TGTATATTAT AAAACTTGTA ATAAACATAA AAAAATTAAC
  TTATAAGGAA AAAAAAAAAG ACCAGGGCTG GAAAAGTGGC TCAGTGGTTA AGAACACTTG
  CTGTACAATC GTGAGGACCA GAGTGCAGGT CCCAGCATCG ACGTCAGGCA AGTCACGGCC
  ATCTGTAACT CAAGAGCCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50975062	NES13920833	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38782889					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50975062	NES13920833	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68314189 () rs orientation: forward

Symbol	Name	Function Class
Gm10723	predicted gene 10723	927 bp upstream
Iqschfp	Iqcj and Schip1 fusion protein	within coordinates
Schip1	schwannomin interacting protein 1	within coordinates