rs38783901 SNP Detail

Summary

• ID
  rs38783901
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:96359346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGGCATC TCCAGCATGC
  CCATTATTAA AAGTATTGCC TGTTGCATTG AACAGTATAA TTTAGTGCTT TGTTTCACAT
  GCTAGTGTAA CCTTTTTGTG GTTGCAGATT ATAATAGGTC TACTGAGCAC TCTTTAAGTA
  GTGCTAATAT GGAATTCTAT AATGTGTTTT AAATTGATGT ATCCTTGCTT ACTAATAAGG
  Y
  AATACTACTC AGTGGACAGC TTTCACACTA TTGGCATTTC CTTTCTAGTT TGAAGTCTTT
  TTATCCTTCT TGTTTACTTT TCAATTGTGT TGCTCTTTCA CACTCAAGAT ACAACTCGTT
  TGTCCAGTGA ACATGTTGCA AATATACTCT ACCCATTTTA GATTCATCTT TTCACTGTAT
  GTGCATGCGG GAAGGTATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51771836	NES14721792	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38783901					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51771836	NES14721792	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:96359346 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16074	CpG island 16074	1076 bp distal
Gm72185	predicted gene, 72185	1419 bp upstream
Mrpl1	mitochondrial ribosomal protein L1	within coordinates
Rr367885	regulatory region 367885	1235 bp downstream
Rr614893	regulatory region 614893	1984 bp distal
Rr614894	regulatory region 614894	1446 bp distal
Rr614895	regulatory region 614895	1333 bp distal
Rr614896	regulatory region 614896	510 bp distal
Tssr47395	transcription start site region 47395	1999 bp downstream
Tssr47396	transcription start site region 47396	1724 bp downstream
Tssr47397	transcription start site region 47397	1326 bp downstream
Tssr51962	transcription start site region 51962	1461 bp upstream