rs387853739 SNP Detail

Summary

• ID
  rs387853739
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:97596498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCC TCCTCCTCCT CCTCCTCCTT
  S
  TCCTCCTCCT CCTCTTCTTC TTCTT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZW/LacJ	PL/J	QSi5/Ianm	SJL/J	SM/J	ST/bJ
ss916307586	MGP_WTSI_3_97689182	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZW/LacJ	PL/J	QSi5/Ianm	SJL/J	SM/J	ST/bJ
rs387853739					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916307586	MGP_WTSI_3_97689182	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97596498 () rs orientation: forward

Symbol	Name	Function Class
Gm66506	predicted gene, 66506	1611 bp upstream
Mir7225	microRNA 7225	1327 bp downstream
Pde4dip	phosphodiesterase 4D interacting protein (myomegalin)	646 bp downstream
Tssr30803	transcription start site region 30803	1647 bp upstream