rs38785536 SNP Detail

Summary

• ID
  rs38785536
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:59376448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAG AGCTCTGCAT GCTTGCAAGT
  R
  GCCAGTTAGA GACCCTTTTC TCTGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50898715	NES13494804	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	G	A	G	A	A		A	A	A	A		A
ss325874046	CHEV_19_59462506	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38785536					SNP	A	A	A	A	G	G	A	G	A	A	G	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50898715	NES13494804	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:59376448 () rs orientation: forward

Symbol	Name	Function Class
Gm33756	predicted gene, 33756	1447 bp upstream
Rr370546	regulatory region 370546	1207 bp upstream
Rr550620	regulatory region 550620	537 bp distal
Rr550621	regulatory region 550621	661 bp distal
Rr550622	regulatory region 550622	631 bp distal
Rr550623	regulatory region 550623	660 bp proximal
Rr550624	regulatory region 550624	961 bp proximal
Rr550625	regulatory region 550625	1374 bp proximal