rs387858088 SNP Detail

Summary

• ID
  rs387858088
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:105279034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGG AATGAAGGAA GGAAGGAAGG
  R
  AGGGAGGGAG GGAGGGAGGG AGGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi5/Ianm	SPRET/EiJ	ST/bJ	SWR/J
ss917606474	MGP_WTSI_5_105131168	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	A	A	G	G	G	A	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi5/Ianm	SPRET/EiJ	ST/bJ	SWR/J
rs387858088					SNP	G	G	G	G	G	G	A	A	G	G	G	A	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917606474	MGP_WTSI_5_105131168	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:105279034 () rs orientation: forward

Symbol	Name	Function Class
Gbp4	guanylate binding protein 4	within coordinates
Tssr1571	transcription start site region 1571	604 bp downstream
Tssr52267	transcription start site region 52267	159 bp downstream
Tssr52268	transcription start site region 52268	204 bp downstream
Tssr52269	transcription start site region 52269	266 bp downstream
Tssr52270	transcription start site region 52270	447 bp downstream
Tssr52271	transcription start site region 52271	570 bp downstream
Tssr52272	transcription start site region 52272	629 bp downstream
Tssr52273	transcription start site region 52273	699 bp downstream
Tssr52274	transcription start site region 52274	727 bp downstream
Tssr52275	transcription start site region 52275	747 bp downstream
Tssr52276	transcription start site region 52276	776 bp downstream
Tssr52277	transcription start site region 52277	806 bp downstream
Tssr52278	transcription start site region 52278	828 bp downstream
Tssr52279	transcription start site region 52279	894 bp downstream
Tssr52280	transcription start site region 52280	943 bp downstream
Tssr52281	transcription start site region 52281	973 bp downstream
Tssr52282	transcription start site region 52282	1003 bp downstream
Tssr52283	transcription start site region 52283	1081 bp downstream
Tssr52284	transcription start site region 52284	1140 bp downstream
Tssr52285	transcription start site region 52285	1174 bp downstream
Tssr52286	transcription start site region 52286	1187 bp downstream
Tssr52287	transcription start site region 52287	1216 bp downstream
Tssr52288	transcription start site region 52288	1233 bp downstream
Tssr52289	transcription start site region 52289	1313 bp downstream
Tssr52290	transcription start site region 52290	1420 bp downstream
Tssr52291	transcription start site region 52291	1760 bp downstream