rs38786599 SNP Detail

Summary

• ID
  rs38786599
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:162954487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGATGAGGT GGTTTCAGGT TTTTAAATAT GTGACCATGA
  GTTTGGCGTG TCAGAGGCAA GCCTTTCTAA ATGACACTTG GAGCAGTCAT GGACGATAAC
  R
  GGAAGCAGAT GTGAATACTG ACTTTAAGTC AGACCTGGGT TCATAATCAC ATCCGGGGGG
  ATTACTAGCT GATGAGCCCT AGCAAGGGAT TTTCCCATA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51394890	NES14460296	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	A	A	G	A	A	G	A
ss145951628	ENSMUSSNP1421215	ENSEMBL	ENSEMBL_Sanger	f	SNP								G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38786599					SNP	A	A	A	A	A	A	A	G	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51394890	NES14460296	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162954487 () rs orientation: forward

Symbol	Name	Function Class
D1Mit314	DNA segment, Chr 1, Massachusetts Institute of Technology 314	882 bp distal
Rr407202	regulatory region 407202	within coordinates
Rr422057	regulatory region 422057	81 bp distal