rs387866451 SNP Detail

Summary

• ID
  rs387866451
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  138
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164299460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCC TCTCTCCCTC TCTTCCTCTC
  A
  CCCTCTCTCC CTCTCCCCCT CTCTC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CE/J	CZECHII/EiJ
ss915799097	MGP_WTSI_2_164457540	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CE/J	CZECHII/EiJ
rs387866451					SNP	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915799097	MGP_WTSI_2_164457540	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164299460 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr397476	regulatory region 397476			414 bp downstream
Rr569623	regulatory region 569623			554 bp distal
Rr569624	regulatory region 569624			within coordinates
Rr569625	regulatory region 569625			333 bp distal
Sys1	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)			Intron
				Noncoding-Transcript-Variant
Tssr21592	transcription start site region 21592			552 bp downstream