rs38788176 SNP Detail

Summary

• ID
  rs38788176
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:32628802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAGTTAGAG AAGAGAATGC CAATTTTCAC CCGGGTTCTG
  CCTCTCCTTT GCTCGTCACT CCTTGTCATT CTTGAGAAGC TTAGGTCCCT GCTATGTGGA
  S
  AGTCTGTTGC ATGTGGCGCC ATGTTGTGCG CCCGCGTGGC CTCGCCTGGG AAAGTGGGGT
  TGCTCATTTT GTGTCACAGT TTTCCTGCTT TGGATACAG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50669220	NES14013667	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	G	C	C	G	C	C	C	C	C	G	C
ss136250182	ENSMUSSNP5295733	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38788176					SNP	C	C	C	C	C	G	C	C	G	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50669220	NES14013667	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:32628802 () rs orientation: forward

Symbol	Name	Function Class
Ets1	E26 avian leukemia oncogene 1, 5' domain	within coordinates
Rr368708	regulatory region 368708	58 bp downstream
Rr676235	regulatory region 676235	1932 bp distal
Rr676236	regulatory region 676236	974 bp distal
Rr676237	regulatory region 676237	within coordinates
Tssr84287	transcription start site region 84287	745 bp downstream
Tssr88694	transcription start site region 88694	602 bp downstream