rs38796244 SNP Detail

Summary

• ID
  rs38796244
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:88862528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTAAGTGG TTATCATGAA
  AGTGCTTCGG AAAATTTTTT CTTGAGACAA AGTATCACTG TGTGGCCCAG GCTGGCTTAA
  ACGTCTACCT GGGTAAACAC TATCATGTCT GGCTTAAGCA AACACTGTCT TAGAGGAATA
  TACTCATACT CTAGGGCTGT GAACTTAAAG AGGAACAAAC CCCTAACTCT CAACATAAAT
  M
  AAGCCACCCA AACTCATCTA GATTCAGCAC ACTCAGCCTT CATCTGACTC TTTAGATATA
  GTACATTTCA GCTTCCACCA GCAACTCTAT GAGTCCCAAA CAGAGGTGAG CTTCTCCTAT
  TCAACACAAA ATGGGAACAT GAGATTACAA AAGACGCCCC TACTTTGCAG TTTAATGTCT
  TAATGCTTAC CTCTGCTGTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51740340	NES14559981	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38796244					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51740340	NES14559981	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:88862528 () rs orientation: forward

Symbol	Name	Function Class
Gm8702	predicted gene 8702	1696 bp downstream
Mlc1	megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)	within coordinates
Rr507763	regulatory region 507763	45 bp proximal
Rr507764	regulatory region 507764	672 bp proximal
Tssr135826	transcription start site region 135826	466 bp upstream
Tssr135827	transcription start site region 135827	376 bp upstream
Tssr135828	transcription start site region 135828	217 bp downstream
Tssr135829	transcription start site region 135829	242 bp downstream
Tssr135830	transcription start site region 135830	448 bp downstream
Tssr135831	transcription start site region 135831	633 bp downstream