rs38802315 SNP Detail

Summary

• ID
  rs38802315
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4840916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGAATCAC TTATGTCCTT
  GAACATTCTA ACCAGTGTGA CACTAGAACT AAGGTCTCCA CCACTGCCAT GGGTCATAGC
  TCACTGGACA GGCTGGGCTG GCTGGGCTGG CTGGGTTGAA GCTTCAATCT GCATTCTGAA
  TGGGGGCTTG GAAGATGCAG AAAACCCTAT AAACAGATGC AAAGAGCTGA CTGGGCCAAC
  W
  CGCCAACACC AGTCCTGCCT GGGTTCCTCT CCTCAGCAAA CCAGCCACAT TCTACATTGG
  ACTTTTGGAT TCAGGGTGGA TTTTCCTTCC GAGAAGAACA CATGCATAGC TCCCTGGCTT
  TCTCATTCTA ATCTTGAAGT ATAATCACTT CTGAATCCAG TCTGTACTTT AACTTTGCCA
  GGATGTGGAA GCAAGAGCAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss50908926	NES13484801	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs38802315					SNP	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50908926	NES13484801	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4840916 () rs orientation: forward

Symbol	Name	Function Class
Gm6123	predicted gene 6123	438 bp upstream
Rr407423	regulatory region 407423	363 bp distal
Rr407424	regulatory region 407424	617 bp distal
Tssr5799	transcription start site region 5799	401 bp upstream