rs38803743 SNP Detail

Summary

• ID
  rs38803743
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131565053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGG ATTTGGAGCA GAGCAGAGGT
  R
  CTTGGGCATG CCTTCTCAGC TCCGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss51366992	NES14473869	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	A	G	A		G	A	G		G
ss319974764	CHEV_1_133533892	CHEVERUD	SCREENING_POP	f	SNP								G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs38803743					SNP	G	A	G	G	A	G	A	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51366992	NES14473869	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131565053 () rs orientation: forward

Symbol	Name	Function Class
Ctse	cathepsin E	999 bp upstream
Rr12195	regulatory region 12195	148 bp proximal
Rr28482	regulatory region 28482	547 bp proximal
Rr366988	regulatory region 366988	899 bp upstream
Tssr8635	transcription start site region 8635	955 bp upstream
Tssr8636	transcription start site region 8636	991 bp upstream
Tssr8637	transcription start site region 8637	1039 bp upstream
Tssr8638	transcription start site region 8638	1073 bp upstream
Tssr8639	transcription start site region 8639	1125 bp upstream
Tssr8640	transcription start site region 8640	1170 bp upstream