rs38804000 SNP Detail

Summary

• ID
  rs38804000
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:53017784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGAAAAAT GACTAGATCT
  GTCAGTAGTA GCTCATGGGA CTCGGAAAGG AACGCTCAGC TGAGGTAGTA ACTGGAGAAG
  ACACTCCACG TCTACCACCC ACTCCATTCA CACTGCTCAG TCAGTGCTGA GTCCTCTAAA
  TACAATCTTC AGGAACAGCA TCGAGAGACA TCCGTACTTA GCAACTCCAA TGGGCAGTTT
  R
  AATAACCATC TGCCAATCAG AGATTTACAT TAGTTGTACC TGAGATAATT TAGCCATGTA
  TGCTTTTCTA ATATAGTACT TTAATGTAGC CTTATAGTCT TAATTATGAA GTGGCACCTG
  GGGGTGGGAA AAGCATTTAA AGAGGGGCAG AGCTCTGGTG TGGAGGCAGT GACTGCCTCT
  CCCTCCACAA CCGCTCATCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51117977	NES14342441	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38804000					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51117977	NES14342441	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53017784 () rs orientation: forward

Symbol	Name	Function Class
Auh	AU RNA binding protein/enoyl-coenzyme A hydratase	within coordinates
Gm60498	predicted gene, 60498	1557 bp downstream
Rr284124	regulatory region 284124	1818 bp proximal