rs38804445 SNP Detail

Summary

• ID
  rs38804445
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:19278673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTCCAACA TGTAAAGGAA
  GAGAAAAAAC TTAATAAAAT GGAGACTCCA GGCAAACAGA AAGACACCAA GGAACCACTA
  AAAATATAGA ACAATCCCTA AAGCAACAAG CAATATAGAT TGTAGGGTCC ACAAGATATT
  CAAGTTTCCA AATGTGTTAG ACACAATGAG CAAAATATCA GAAACCATTG TGGTAAATAG
  Y
  GGTGTTATTC TTGTTCCACA ATGATACTTT TATAAGGTTG CATCAATAGA GAAATATAAC
  TCAAAGTCAA AAATCTAGTG GTGTTTTTTT AATGCTCCCC TAAATATACA AGAATAGGAA
  AACTGTCTTT AAAATCTCAG TAATGGTTCT CCTAAAAGAA AAAAAAAAAA AACTATGTAG
  AAAATTTGGG GACTGATGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50916974	NES13479835	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38804445					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50916974	NES13479835	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:19278673 () rs orientation: forward

Symbol	Name	Function Class
Cpgi65	CpG island 65	1232 bp proximal
Rr408235	regulatory region 408235	1925 bp distal
Rr408237	regulatory region 408237	559 bp distal
Rr408238	regulatory region 408238	304 bp proximal
Rr408239	regulatory region 408239	522 bp proximal
Tfap2b	transcription factor AP-2 beta	465 bp upstream
Tssr6030	transcription start site region 6030	491 bp upstream
Tssr6031	transcription start site region 6031	534 bp upstream
Tssr6032	transcription start site region 6032	549 bp upstream
Tssr6033	transcription start site region 6033	565 bp upstream
Tssr6034	transcription start site region 6034	589 bp upstream
Tssr6035	transcription start site region 6035	621 bp upstream
Tssr6036	transcription start site region 6036	645 bp upstream
Tssr6037	transcription start site region 6037	663 bp upstream
Tssr6038	transcription start site region 6038	691 bp upstream
Tssr6039	transcription start site region 6039	706 bp upstream