rs38805712 SNP Detail

Summary

• ID
  rs38805712
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:47956803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATCTGGAG GAAACAGCTG
  GGTAACTGAT CAGGTGTTTT TCCAAGTAGA AGTGGAATGC AGTGTTCCTG TGGTACTGTT
  TAGAGATTTT CAATTCTCAC ATCATGTAGC ACACAGTGGT GCTATTAATT AGAAGCTGAT
  GGAAAGCCAG AAATAAATCC TTATGTCAGG CACAGTGTCT CACATGGAGG AGACTCAAAG
  Y
  CATGCAACTT TTTGAAATTG AAATGTTCAG GGTAACAGCA AGGATAACAG ACTCCCTGCT
  ACCAAGTCAA TATTTTCCAA CTGCTAGATG TTAATTTCAT TAATACCCAG TTTGTTCTTT
  CAATTTATAA CATGGAGGTA GTCTCTCTTA TTCTTTAAAT ATTATTAATA AAAAGTAATT
  GAATTGTTGA GATTTCATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51246454	NES14286121	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T	T	T	T	C	T	T	T	T	C
ss149077387	ENSMUSSNP5920863	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38805712					SNP	C	C	T	T	T	T	T	T	T	T	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51246454	NES14286121	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:47956803 () rs orientation: forward

Symbol	Name	Function Class
Gm19206	predicted gene, 19206	1807 bp upstream
Rr371240	regulatory region 371240	1944 bp downstream
Tssr6618	transcription start site region 6618	201 bp downstream