rs38807977 SNP Detail

Summary

• ID
  rs38807977
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:38304909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTCCTGCT TCTGTATTCC AGGTAACAGT GTATGCCACC
  ATGCCTGGCT CAGAGCACAC AATTAATACC AGTGCAGCCA GGAGACACTG CGGTGCTCAT
  M
  GATTTCACGC CACTTCTCCA CACCCTTACT TCAAAGGTCG AAAGGGCCCT GTGGGTCCGT
  GTCTGGGCTC TCCTCTTCTA GAGCTTTAAC AGCTTTGACC                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51097457	NES14354892	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38807977					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51097457	NES14354892	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:38304909 () rs orientation: forward

Symbol	Name	Function Class
Rr271625	regulatory region 271625	1092 bp proximal
Rr275879	regulatory region 275879	909 bp distal
Rr279089	regulatory region 279089	405 bp proximal
Rr279090	regulatory region 279090	795 bp proximal
Rr279091	regulatory region 279091	1474 bp proximal