rs38814352 SNP Detail

Summary

• ID
  rs38814352
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:88530601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTCACCC CTCTGAGTAG
  AGGGGGCAGC AAGGAATGGG ACATGATGCT TGTGAGCAGC GTGGTTGAGC CCAGAAGCCA
  GCACTCCCTC GGCTTCCTGA CTGGCAGTAG GGCTGAAGGG CCAAGAGGCC AGGGGCCAAG
  AGACACGTGG CAGCACCCAA GTTTAAAGCA CACAGACGAA AGAGATGCAA GCCGGGGATC
  R
  CCAAGGGAAG CTAATGGCAT AGGTCACGAA GGGAAAGGCA AAGGACGGAC TGATGGACAA
  GAGAGCAGTG TTAGACCCAG AAAGCAGCAT GCACCCTGAG GGCAGTCCTG TTCCCAAAGC
  AGGTCGGACA CTGGCCATCC GCCTCTCCTC CAGCTAGTCG GCTCATTTTA CCCCCTCATT
  CCAAAAACCC AATTCTCATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50598737	NES14052510	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	A	A		G	A	A	G		A
ss145451906	ENSMUSSNP5806992	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					A
ss322761672	CHEV_8_90327872	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38814352					SNP	G	G	G	G	G	G	A	A	A	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50598737	NES14052510	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:88530601 () rs orientation: forward

Symbol	Name	Function Class
Rr667021	regulatory region 667021	within coordinates
Rr667022	regulatory region 667022	456 bp proximal
Tssr82324	transcription start site region 82324	417 bp downstream
Tssr82325	transcription start site region 82325	438 bp downstream
Zfp423	zinc finger protein 423	within coordinates