rs38816906 SNP Detail

Summary

• ID
  rs38816906
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72321859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATACAACA AAACTTTAAA
  AGAACTTTTT TTCCCATATT CTCTCATGGA AGGCAATCCA ATGATAAATA CAGCAGTACA
  ATGTTCACTT CTCTTTTAGG TGTAGGAAGT ATTTCCCTAG GGACATACCC CAGGACTCTC
  ACAGCATCTC CAGGGCTGAG TGGCCTTATA TTTACAGTCA TGCCACAATA CTCTGTTGGC
  Y
  GACCCCAGAA CTGGTGTAGT GTTTGCCCAA TGCAAACTTA CTCAAAAAGA GGTTCAACAA
  CTAGCAATCC ACAGAAGAGG AACCAAGGTT CTGCAAATTT GCTGACAGAG GCCAAGATCC
  TGACCTTTGT ACTAAACAGG TACTGGTTGA TTTTTTTTTT TTTTTAATAA TTCCTCCTCC
  CAGGGGAAGT TTCCTGGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss51274576	NES14276971	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs38816906					SNP	C	C	C	C	C	T	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51274576	NES14276971	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72321859 () rs orientation: forward

Symbol	Name	Function Class
Cpgi355	CpG island 355	1336 bp proximal
Pecr	peroxisomal trans-2-enoyl-CoA reductase	within coordinates
Tmem169	transmembrane protein 169	1695 bp upstream
Tssr114	transcription start site region 114	1572 bp downstream
Tssr115	transcription start site region 115	1588 bp downstream
Tssr116	transcription start site region 116	1605 bp downstream
Tssr7298	transcription start site region 7298	1667 bp upstream
Tssr12164	transcription start site region 12164	1524 bp downstream
Tssr12165	transcription start site region 12165	1548 bp downstream