rs38821452 SNP Detail

Summary

• ID
  rs38821452
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:90881693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATGGCCTG GTGCCCAGGT
  TTCCATCAGC TTAGGGGCTC CCGTGTCCCA TACGCTGCTC TGACTCTTTC CTTTCCAGCC
  CCTGACATCA ATCCTGCCTG GTACACGGGT CGTGGGATCA GGCCTGTGGG CCGCTTCGGG
  AGGAGGAGGG CAGCCCTGAG GGATGTCACC GGACCTGGCC TGCGGTGCCG GCTAAGCTGC
  Y
  TCCCACTGGA TGGAAGTGCC AAGTTCTCTC ACAGCTCATG AAGACAGTGA TGCTGAGCCC
  AAGCCCACCC TCCCTGTCCC CCCGCAGAGC CTCCTCCACC CTCCCTTTCC GGTTTTCCCT
  CTGATCTAAT AAAAGTGCTG GCTTTGTTTA TTGTACACTT GTAACTATGT GGTAACAAAC
  CGGAAGGTGC TTTCTCTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss51301186	NES14511585	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs38821452					SNP	T	T	T	T	C	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51301186	NES14511585	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:90881693 () rs orientation: forward

Symbol	Name	Function Class
Prlh	prolactin releasing hormone	within coordinates
Rr415503	regulatory region 415503	1973 bp distal